PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33847

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 666aa MW: 72986.2 Da PI: 5.2503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33847	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	487	532	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L OIT33847 487 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 532 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MNLWNTSGTT DDNVSMMEAF MSSDLTSFWA TSNSTAAAVT SNSDHIPVNT PTVLLPSSCA 60 STVTAVAVDA SKSMPFFNQE TLQQRLQTLI DGARETWTYA IFWQSSVVDL TSPFVLGWGD 120 GYYKGEEDKA GRKLAVSSPA YIAEQEHRKK VLRELNSLIS CTQTGTDDAV DEEVTDTEWF 180 FLISMTQSFV NGSGLPGQAL YNSSPIWVAG AEKLAASHCE RARQAQGFGL QTMVCIPSAN 240 GVVELGSTEL IIQSSDLMNK VRVLFNFNND LGSGSWAVQP ESDPSALWLT DPSPAAVQVK 300 DLNTVPSSNS SKQVVFDNEN NGHICDNQQQ HHSQQQTQGF FTRELNFSEF GFDGSSNNRN 360 GNSSVSCKPE SGEILNFGDS TKKSANGNLF SGQSHFGAGE ENKNKKRSPA SRGSNEEGML 420 SFVSGTILPA ASGAMKSSGC VGEDSSDHSD LEASVVKEAE SSRVVEPEKR PKKRGRKPAN 480 GREEPLNHVE AERQRREKLN QRFYALRAVV PNVSKMDKAS LLGDAISYIN ELKLKLQNTE 540 TDREDLKSQI EDLKKELASE DSWRPGPPPN QDHKMSSHTG SKIVDVDIDV KIIGWDAMVR 600 IQCNKKNHPA ARLMVALKEL DLEVHHASVS VVNDLMIQQA TVKMGSRLYT EEQLRIALTS 660 RVAETR

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MNLWNTSGTT DDNVSMMEAF MSSDLTSFWA TSNSTAAAVT SNSDHIPVNT PTVLLPSSCA  60
STVTAVAVDA SKSMPFFNQE TLQQRLQTLI DGARETWTYA IFWQSSVVDL TSPFVLGWGD  120
GYYKGEEDKA GRKLAVSSPA YIAEQEHRKK VLRELNSLIS CTQTGTDDAV DEEVTDTEWF  180
FLISMTQSFV NGSGLPGQAL YNSSPIWVAG AEKLAASHCE RARQAQGFGL QTMVCIPSAN  240
GVVELGSTEL IIQSSDLMNK VRVLFNFNND LGSGSWAVQP ESDPSALWLT DPSPAAVQVK  300
DLNTVPSSNS SKQVVFDNEN NGHICDNQQQ HHSQQQTQGF FTRELNFSEF GFDGSSNNRN  360
GNSSVSCKPE SGEILNFGDS TKKSANGNLF SGQSHFGAGE ENKNKKRSPA SRGSNEEGML  420
SFVSGTILPA ASGAMKSSGC VGEDSSDHSD LEASVVKEAE SSRVVEPEKR PKKRGRKPAN  480
GREEPLNHVE AERQRREKLN QRFYALRAVV PNVSKMDKAS LLGDAISYIN ELKLKLQNTE  540
TDREDLKSQI EDLKKELASE DSWRPGPPPN QDHKMSSHTG SKIVDVDIDV KIIGWDAMVR  600
IQCNKKNHPA ARLMVALKEL DLEVHHASVS VVNDLMIQQA TVKMGSRLYT EEQLRIALTS  660
RVAETR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	469	477	KRPKKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-179	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT33847