PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33406
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32467.3 Da    PI: 8.0809
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33406genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18134188256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  OIT33406 134 RKKLRLSKDQSAVLEETFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 188
               788899***********************************************98 PP
2HD-ZIP_I/II128.33.2e-41134223191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEe+F+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
     OIT33406 134 RKKLRLSKDQSAVLEETFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 223
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MMVEKEDLGL SLSLSFPDNN KNSTTTNNPL HHQLNLIPSS SPFNLFHKTS WTDSFPSSDR  60
NSETCRVETR TFLKGIDVNR LPATADADEE AGVSSPNSTI SSVSGNKRSE RETNNCEEHE  120
MERASDEEDG ETSRKKLRLS KDQSAVLEET FKEHNTLNPK QKLALAKRLG LRPRQVEVWF  180
QNRRARTKLK QTEVDCEFLK RCCENLTEEN RRLQKEVQEL RALKLSPQFY MQMTPPTTLT  240
MCPSCERVAG PQSSSGPTST HVGPAQHRPM PFNLWANTPK SLHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139SRKKLRL
2183191RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-108HD-ZIP family protein