PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33178

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 545aa MW: 60008.6 Da PI: 8.156

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33178	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.6	1.5e-42	183	259	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC +dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q+ OIT33178 183 CQVQGCGKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQT 259 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MESWSYVSGG GKGFVSEESA ARCIKLPLCA GYGEGQDYKE SVYVDDGISL GKNRVNGWEL 60 NTPCSWRNSM GWSSTQERGK DQDFAEMGCQ DLMRKSLSNN QIRDAMSNKL GGQRAFVSIR 120 VPHSAFSGED ESSSVVESNC KESSLIDLKL GSFKSPNIIP NLSSTVPAKR NRAGGLSSHT 180 QFCQVQGCGK DLSSCKDYHK RHKVCEVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK 240 RSCRKRLAGH NERRRKPQTG LHSGRAGRLF QSYAGKSSAV TRFQGTPFAT SSFICQDILG 300 SGLLHQPKHE MHDWYKNVKV EHSSDYIPQP TMPFTNGQSQ PRPLFSTSYH TDKHPPALHD 360 EGITAITRSK NNESSNSYLN DIEGSDFVSP SLYHSNSIGS EVLNVMDSAS TFQGISNSGC 420 ALSLLSSQSQ DSSNYSSLVP NAHHLITPSS SADYNVTQTS EKFPGVNLKD STSNASNIFN 480 LSGAISAEGR LEQILRNNCG INRSIHGLDY VNTKNQLSCE DGPTIDLLQL SSQLHRVEHQ 540 RHSMK

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MESWSYVSGG GKGFVSEESA ARCIKLPLCA GYGEGQDYKE SVYVDDGISL GKNRVNGWEL  60
NTPCSWRNSM GWSSTQERGK DQDFAEMGCQ DLMRKSLSNN QIRDAMSNKL GGQRAFVSIR  120
VPHSAFSGED ESSSVVESNC KESSLIDLKL GSFKSPNIIP NLSSTVPAKR NRAGGLSSHT  180
QFCQVQGCGK DLSSCKDYHK RHKVCEVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK  240
RSCRKRLAGH NERRRKPQTG LHSGRAGRLF QSYAGKSSAV TRFQGTPFAT SSFICQDILG  300
SGLLHQPKHE MHDWYKNVKV EHSSDYIPQP TMPFTNGQSQ PRPLFSTSYH TDKHPPALHD  360
EGITAITRSK NNESSNSYLN DIEGSDFVSP SLYHSNSIGS EVLNVMDSAS TFQGISNSGC  420
ALSLLSSQSQ DSSNYSSLVP NAHHLITPSS SADYNVTQTS EKFPGVNLKD STSNASNIFN  480
LSGAISAEGR LEQILRNNCG INRSIHGLDY VNTKNQLSCE DGPTIDLLQL SSQLHRVEHQ  540
RHSMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-47	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT33178