PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33023

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 458aa MW: 51154.3 Da PI: 5.8051

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33023	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H OIT33023 152 HICEKCGKGFASTRALYGHMKVH 174 68*******************99 PP
2	zf-C2H2	12.3	0.00052	381	403	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C k+F++ +L H r H OIT33023 381 HKCPICFKVFPSGQSLGGHKRAH 403 79**************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MEEIPEVEKH KCRFCNQSCS SGRSLGGHMR VHLDLISAEK KQKIEAENKM GSEEEEEADN 60 HFDNLSISEQ SDSSMSQEKV NNISTNDVDD IDSIGYGLRE NPRKSWRGSE LKLSSLKTKN 120 LCKECGKEFS CTQALAGHLR THLKNGTTEK SHICEKCGKG FASTRALYGH MKVHVKRSRV 180 DQESESSKQS LSDFETVCPI RKKRSKIKYK TDANPESSSA ISEVEEMEEA AKTLMMLSCG 240 VRDWDEYISI SKPLKNENAK NLSQAGCSDS SCVDGYEKKC ENEVINDEFS GKLMMMNTEI 300 TRVCYSTTIL GLDNDPSEDL AFLNYCSVKN AGVNFQVLNQ KTNFVSDMVN SQLESIDDSP 360 VELGTIGLIR TSPEPIKSKD HKCPICFKVF PSGQSLGGHK RAHYTGFNES KTKETMVKKL 420 EDLSDNHRSF DLNNPVNVVD GGEKDVVELN LWWVGGSS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MEEIPEVEKH KCRFCNQSCS SGRSLGGHMR VHLDLISAEK KQKIEAENKM GSEEEEEADN  60
HFDNLSISEQ SDSSMSQEKV NNISTNDVDD IDSIGYGLRE NPRKSWRGSE LKLSSLKTKN  120
LCKECGKEFS CTQALAGHLR THLKNGTTEK SHICEKCGKG FASTRALYGH MKVHVKRSRV  180
DQESESSKQS LSDFETVCPI RKKRSKIKYK TDANPESSSA ISEVEEMEEA AKTLMMLSCG  240
VRDWDEYISI SKPLKNENAK NLSQAGCSDS SCVDGYEKKC ENEVINDEFS GKLMMMNTEI  300
TRVCYSTTIL GLDNDPSEDL AFLNYCSVKN AGVNFQVLNQ KTNFVSDMVN SQLESIDDSP  360
VELGTIGLIR TSPEPIKSKD HKCPICFKVF PSGQSLGGHK RAHYTGFNES KTKETMVKKL  420
EDLSDNHRSF DLNNPVNVVD GGEKDVVELN LWWVGGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	3e-18	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT33023