PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32974

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 514aa MW: 57367.9 Da PI: 6.2518

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32974	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.6e-07	263	284	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H OIT32974 263 FCTICGKGFKRDANLRMHMRGH 284 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MDPDDSLSED PWTKPSSSGN ELLKIMPSDN HSFTNFNLHA QKWEGSSYLD QQTRIEQQFS 60 GFTQPKQTYQ MDQHGNQMNE NNDSTSTKDW DPSTLLNNLS FLEQKIHQLQ ELVHLIVGRR 120 GQTGLQGNDL IVQQQQLITA DLTSIIVQLV STAGSLLPTM KHTLSSVSPV ASQLVQFGCV 180 TVPSATCTNG GGLPCNDGGV TKVEDQSNHV DQLRDCGIEQ NHAVDGHESK DEDEAEEEEN 240 LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT PAALAKPHKE 300 PSSEPTLIKR YSCPNVGCKR NKEHKKFQPL KTILCVKNHY KRTHCEKAYT CSRCNIKKFS 360 VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG HTPAVPLDET KGSAGTSDQG 420 QTSEVTMKAR REDFKVNASH GNEFQDPRDI KSAADDPGSY FSPLNFDTSN LNGFQEFPRP 480 PFDESDSSFS FLLSGSCEYP PHKAAKYMSS TELE

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MDPDDSLSED PWTKPSSSGN ELLKIMPSDN HSFTNFNLHA QKWEGSSYLD QQTRIEQQFS  60
GFTQPKQTYQ MDQHGNQMNE NNDSTSTKDW DPSTLLNNLS FLEQKIHQLQ ELVHLIVGRR  120
GQTGLQGNDL IVQQQQLITA DLTSIIVQLV STAGSLLPTM KHTLSSVSPV ASQLVQFGCV  180
TVPSATCTNG GGLPCNDGGV TKVEDQSNHV DQLRDCGIEQ NHAVDGHESK DEDEAEEEEN  240
LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT PAALAKPHKE  300
PSSEPTLIKR YSCPNVGCKR NKEHKKFQPL KTILCVKNHY KRTHCEKAYT CSRCNIKKFS  360
VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG HTPAVPLDET KGSAGTSDQG  420
QTSEVTMKAR REDFKVNASH GNEFQDPRDI KSAADDPGSY FSPLNFDTSN LNGFQEFPRP  480
PFDESDSSFS FLLSGSCEYP PHKAAKYMSS TELE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-170	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT32974