PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32810

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 580aa MW: 66230.4 Da PI: 5.3725

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32810	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2.1e-11	319	361	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+eY+ +L OIT32810 319 VAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 361 68*******************66......************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MELMHLMERL RPIMGLKNWD YCVLWKLSED QRFLEWICCC CGGAEQNMHS CEQEILFPDS 60 STSPCRDVMF QHPRTTACDL LAQLPSSLAL DSGIYAQALL SNQAKWMNFV PFSESSMSNE 120 IIGTSVLIPS PLGLLELFSA KQLPEDEKVI DFVSTQCNIY LEQHKFPSNG DDNTNSQNLY 180 QQIVSPVTSR DHSDHLSYDF PLKRKNLDTS SVNFLPHFNT YNTSEIENNT TTMLFDQNTS 240 DVTHFSTSME NKYMSEMDAY LQKQMMRNSS NQAGLIDDES VKQHENGRSN SGSDSDQNED 300 EDDPKFRRRN GKGQSKNLVA ERKRRKKLNE RLYALRALVP KISKLDRASI LGDAIEYVME 360 LEKQVKDLQL ELEEHSDDDQ SGRNQNQVQP EALGQNGSDQ NNRPKSENGK LSNGSHTGIS 420 ANSNGSIDPS RQNQELEEND KLQQMEPQVE VAQLDGNEFF VKVFLEHKAG GFVRILEALN 480 SLGLEVTNVN ATRHTCLVSS IFKVEKRDNE MVQADNVRES LLELTRNPSR GWSEMGRSLS 540 ENNANRSTDY LHNNQYQHHL ENNHQKQAAN SHHFHRHHHM

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MELMHLMERL RPIMGLKNWD YCVLWKLSED QRFLEWICCC CGGAEQNMHS CEQEILFPDS  60
STSPCRDVMF QHPRTTACDL LAQLPSSLAL DSGIYAQALL SNQAKWMNFV PFSESSMSNE  120
IIGTSVLIPS PLGLLELFSA KQLPEDEKVI DFVSTQCNIY LEQHKFPSNG DDNTNSQNLY  180
QQIVSPVTSR DHSDHLSYDF PLKRKNLDTS SVNFLPHFNT YNTSEIENNT TTMLFDQNTS  240
DVTHFSTSME NKYMSEMDAY LQKQMMRNSS NQAGLIDDES VKQHENGRSN SGSDSDQNED  300
EDDPKFRRRN GKGQSKNLVA ERKRRKKLNE RLYALRALVP KISKLDRASI LGDAIEYVME  360
LEKQVKDLQL ELEEHSDDDQ SGRNQNQVQP EALGQNGSDQ NNRPKSENGK LSNGSHTGIS  420
ANSNGSIDPS RQNQELEEND KLQQMEPQVE VAQLDGNEFF VKVFLEHKAG GFVRILEALN  480
SLGLEVTNVN ATRHTCLVSS IFKVEKRDNE MVQADNVRES LLELTRNPSR GWSEMGRSLS  540
ENNANRSTDY LHNNQYQHHL ENNHQKQAAN SHHFHRHHHM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	327	RRRNGKGQSKNLVAERKRRKK
2	321	328	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-141	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT32810