PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32325
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79456.1 Da    PI: 6.5482
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32325genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-193186156
              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +++ +++t++q+++Le+ F+++++p++++r +L++ lgL  rq+k+WFqNrR+++k
  OIT32325 31 KKRYHRHTANQIQRLESIFKECPHPDEKTRLQLSRDLGLAPRQIKFWFQNRRTQMK 86
              678899***********************************************998 PP
2START179.32.2e-562294542206
               HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               +a  a++el+++++ +ep+W+ks+    + +n + + ++f+++++       ++ea+r+sgvv+m+   lv  ++d + +W+e ++    ka tlevissg
  OIT32325 229 IAGNAMEELIRLVQTNEPLWMKSAidgkDVLNFENYDRIFPRANShlknhnVRIEASRDSGVVIMNGLALVDMFMDAN-KWQEFFPtivsKARTLEVISSG 328
               67899*********************999999********9999999*9999**************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwll 181
                     ++lqlm+ elq+lsplvp R  +f+R+++q  +g+w+ivdvS d +q++  ss + ++++lpSg+li++++ng+skvtwvehv+++++ + h l 
  OIT32325 329 vmgsrmSTLQLMYEELQVLSPLVPtRQLYFLRFCQQIDQGSWAIVDVSYDITQENLYSSTSCKVHRLPSGCLIQDMPNGYSKVTWVEHVEVEEKGIiHRLC 429
               ******************************************************977***********************************99988**** PP

               HHHHHHHHHHHHHHHHHHTXXXXXX CS
     START 182 rslvksglaegaktwvatlqrqcek 206
               r l++sgla+ga +w  tlqr ce+
  OIT32325 430 RDLIHSGLAFGAERWIGTLQRVCER 454
               ***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MNMEYGSGGG GGGTSSGGGG GDPHDAAERR KKRYHRHTAN QIQRLESIFK ECPHPDEKTR  60
LQLSRDLGLA PRQIKFWFQN RRTQMKAQHE RADNCALRAE NDKIRCENIA IREALKNVIC  120
PSCGGPPVTE DSYFDEQKLR IENMQLKEEL DKVSSIAAKY IGRPISQLPP VQPIHLSSLD  180
LSMSSFVGHG PNSLDLDLDL LPGSSSTIPG LAFASLNLSD MDKSLMADIA GNAMEELIRL  240
VQTNEPLWMK SAIDGKDVLN FENYDRIFPR ANSHLKNHNV RIEASRDSGV VIMNGLALVD  300
MFMDANKWQE FFPTIVSKAR TLEVISSGVM GSRMSTLQLM YEELQVLSPL VPTRQLYFLR  360
FCQQIDQGSW AIVDVSYDIT QENLYSSTSC KVHRLPSGCL IQDMPNGYSK VTWVEHVEVE  420
EKGIIHRLCR DLIHSGLAFG AERWIGTLQR VCERYACLMV NSNPTHDLGG VIPSPEGKRS  480
MMKLAKRMVS NFCASINPSN GHQWNTISGL NEFEVRATLQ KSTDPGQPNG VIISAATTIW  540
LPVPPQNVFN FFRDERTRPQ WDVLSNQNPV QEVAHIANGS HPGNCISVLR AYNTSQNNML  600
ILQESCIDSS GALVVYSPVD VPAINIAMSG EDPTYIPLLP SGFTISPDGH QLDQDAASCS  660
SSSSNASTIG GRSGGSLITV VFQILVSSLP SAKMSPESVN TVNNLIGSTV HQIKAALNCS  720
TS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein