PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT32300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 493aa MW: 51648.9 Da PI: 8.1591 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.6 | 3.6e-12 | 53 | 77 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ OIT32300 53 EPDCIYYLRTGFCGYGARCRFNHPR 77 799********************96 PP | |||||||
2 | zf-CCCH | 37 | 5.6e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ OIT32300 99 QPVCQYYMRTGMCKFGASCKYHHPR 123 689********************96 PP | |||||||
3 | zf-CCCH | 32.7 | 1.3e-10 | 144 | 168 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G +CkF+H+ OIT32300 144 GEKECSYYVKTGQCKFGVTCKFHHP 168 7899********************8 PP | |||||||
4 | zf-CCCH | 37 | 5.5e-12 | 314 | 340 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G CkyG++C+++H+p OIT32300 314 PGQPECQYYMKYGDCKYGSSCRYHHPP 340 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.6 | 1.6e-11 | 362 | 386 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++a++G Ck+G++CkF H++ OIT32300 362 APICSHYAQNGVCKFGPSCKFDHPM 386 589********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence |
MERYSGTQSM EVGAPVDPVS EWTVPGGETG LEEPMWQLSL NTGPESYPER PNEPDCIYYL 60 RTGFCGYGAR CRFNHPRDRN SVLGAMRAIG GEYPERVGQP VCQYYMRTGM CKFGASCKYH 120 HPRQGGGSPA PVTVNIYGYP LRPGEKECSY YVKTGQCKFG VTCKFHHPHP AGAQVPAPAA 180 GPGPLAVPAA VPAPHIYPTV QSPSVQSAQQ YGVVSGNWPV ARPTLLPGSY IPGTYGSMLL 240 PPGMVPLPGW TPYPAPASPA PSPSTQPPAA AGPIYGLSQL SPSAPAYLGP YLSVASASGP 300 SSSSQKEHAF PERPGQPECQ YYMKYGDCKY GSSCRYHHPP EWSGPKTSFI LSAMGLPLRP 360 GAPICSHYAQ NGVCKFGPSC KFDHPMGMSY SPSASSLADM AVAPYPVGSS IGTLAPSSSS 420 SDLRPELVSG SGRDAFSTQI SSMSTSSGSV GSMFSKGGHA SHSGVQQSVQ SSNPSSGSSS 480 SSAGHGGEAR TSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-131 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT32300 |