PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32289

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 460aa MW: 49875.5 Da PI: 8.5537

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32289	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	167	244	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+akey+r+h+vC+ hsk+p+v+++g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ OIT32289 167 RCQVEGCSLDLSSAKEYYRKHRVCDSHSKCPKVIIAGVARRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 244 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MEWNAKWDWG NLVMFGSEAA KSPKELQLTD WGIEDGELDA GSFNLSSGGS GNGTGGYVSD 60 VGRGSSIKSS ISASTDSSPN EGLKASNFSF DGSPEDFSKK VKLCSRNSPP MEASVGSVEP 120 LIGLKLGKRT FETIGGAKVS SFPEKHVSSA AAAKKTKSST QNAPTPRCQV EGCSLDLSSA 180 KEYYRKHRVC DSHSKCPKVI IAGVARRFCQ QCSRFHSLSE FDEKKRSCRR RLSDHNARRR 240 KPQQETIQFN SARLSSLFYD SRQPMNLVLN HSQLVQSGAA ANSTWESTEE TKFSITRGST 300 PKPERAGSTN GQSLLPGIQF SRAVGAHSNV SSCLLLPSKG HTAEVFNRGT TESMFNMGTG 360 REFPRALSLL STNSWGSSEP ETVSLNNPTH ANQSSMPEQM MQAIPQGVPL MSCEYWQGGQ 420 PSSDPRDHTL AANSHAGGSF QGIELFKPPF DTDFYLNALN

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MEWNAKWDWG NLVMFGSEAA KSPKELQLTD WGIEDGELDA GSFNLSSGGS GNGTGGYVSD  60
VGRGSSIKSS ISASTDSSPN EGLKASNFSF DGSPEDFSKK VKLCSRNSPP MEASVGSVEP  120
LIGLKLGKRT FETIGGAKVS SFPEKHVSSA AAAKKTKSST QNAPTPRCQV EGCSLDLSSA  180
KEYYRKHRVC DSHSKCPKVI IAGVARRFCQ QCSRFHSLSE FDEKKRSCRR RLSDHNARRR  240
KPQQETIQFN SARLSSLFYD SRQPMNLVLN HSQLVQSGAA ANSTWESTEE TKFSITRGST  300
PKPERAGSTN GQSLLPGIQF SRAVGAHSNV SSCLLLPSKG HTAEVFNRGT TESMFNMGTG  360
REFPRALSLL STNSWGSSEP ETVSLNNPTH ANQSSMPEQM MQAIPQGVPL MSCEYWQGGQ  420
PSSDPRDHTL AANSHAGGSF QGIELFKPPF DTDFYLNALN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	241	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	5e-58	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT32289