PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32234

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 442aa MW: 48755.8 Da PI: 5.8713

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32234	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.7e-13	270	316	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L+ OIT32234 270 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 316 799*********************6.....4***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEQLMGSSSS PMVDSSLPQG DNQLPLGLQH MLQYVIKSQP DWWAYAIFWQ TSSDDEGKAF 60 LAWGDGYFQG AKGGAAVSSS SSSEAAQSER KKVIRGIQAL IDGDNNLIDD GDVTDTEWFY 120 VMSLARSFSV DNGSVPGKAF SSGNFLWITG AAQFQLYSCE RAKEAQIHGI QTLLCIPTSN 180 GVLELGSAHL IKENFDLVQQ VKSLFLSSPP IQFLEKSICF ADIGLVTGLQ QDNEEKLENQ 240 QLDSDKKAVA KKRGRKPKGG DSNINMVALN HVEAERQRRE KLNHRFYALR SVVPNVSRMD 300 KASLLSDAVS YINQLKAKVD ELELQLIDRS SNNNKKQKSN ESGENQSTNT SVDQELRPNS 360 SLEVEVKIVG PDAMIRVQSE NVNYPSAKLM SALRHLQLQV HHASISSVNN LMLHDVVVKV 420 PQGLRTEDGL RTALITTLES NS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEQLMGSSSS PMVDSSLPQG DNQLPLGLQH MLQYVIKSQP DWWAYAIFWQ TSSDDEGKAF  60
LAWGDGYFQG AKGGAAVSSS SSSEAAQSER KKVIRGIQAL IDGDNNLIDD GDVTDTEWFY  120
VMSLARSFSV DNGSVPGKAF SSGNFLWITG AAQFQLYSCE RAKEAQIHGI QTLLCIPTSN  180
GVLELGSAHL IKENFDLVQQ VKSLFLSSPP IQFLEKSICF ADIGLVTGLQ QDNEEKLENQ  240
QLDSDKKAVA KKRGRKPKGG DSNINMVALN HVEAERQRRE KLNHRFYALR SVVPNVSRMD  300
KASLLSDAVS YINQLKAKVD ELELQLIDRS SNNNKKQKSN ESGENQSTNT SVDQELRPNS  360
SLEVEVKIVG PDAMIRVQSE NVNYPSAKLM SALRHLQLQV HHASISSVNN LMLHDVVVKV  420
PQGLRTEDGL RTALITTLES NS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	4e-82	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT32234