PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32164
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 353aa    MW: 41129.3 Da    PI: 6.3361
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32164genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.3e-1939121286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd ++
  OIT32164  39 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 121
               ***********************************9966667766579*****************98766664......3599999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MASSSSSPPP PLLLPPPEST HPQPQISPSP QKKTQPLPWT HQETFNLIQA YQEKWYSLKK  60
GQLKASQWEE VAITVAARCG FDEPSKSATQ CRHKIEKLRK RYRAERLKPY PNSWQYFDLM  120
DRMERGPLPI SAHPVAMVKC QQNSNSISNL NSTAADHQRY YYDNNTDSDE VDAVSYMDMR  180
KNKSKSINHI VRGEMGLMCM NGNENVNVVD HRNVNRMVKD RNFNILDQKD RNFDVMKGIR  240
NPMNEKRKAY FGNVAIEDDD EDDDVEEEVN EEEDEENEGS VGGSELAAEI RGFAERFMRM  300
ENKKIEMMKE TERYRMEMEK RRMEMILENQ RNLIDTINRV VGSHKKVKVA QEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-25Trihelix family protein