PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32095

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 328aa MW: 36191.9 Da PI: 8.1347

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32095	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1.1e-17	167	221	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k OIT32095 167 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLKLRPRQVEVWFQNRRARTK 221 788899***********************************************98 PP
2	HD-ZIP_I/II	125.5	2.4e-40	167	256	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +l OIT32095 167 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLKLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCETLTEENRRLQKELQELR-AL 256 69*************************************************************************************9.44 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MELALSLGGD TQKPFSFLEK STNNSSSHDL RFCMGLGKSN NTHENENNGG RKILHLDLLP 60 LSAVPLNQMP SQIPFPWLSQ NIAAEPGLTN GAAGKVLDMN RRPIIVAEEA EEGADLSSPN 120 SNSAVSSFQM EFSSIYRNGI SRSLIGKRDH SEGGVSDEDE NNNGLARKKL RLTKEQSAFL 180 EESFKEHNTL NPKQKLALAK QLKLRPRQVE VWFQNRRART KLKQTELDCE YLKRCCETLT 240 EENRRLQKEL QELRALKFSQ PLYMQLPATT LTMCPSCERV ATTTAAAVPT AAATATADAD 300 ATNTTLSLAK PNLFPFPPAQ VHAPQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	224	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-72	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT32095