PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT31831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 434aa MW: 47143.5 Da PI: 8.7481 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.5 | 4e-12 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C++++rtG C yG++C+++H++ OIT31831 49 PGVPDCSYYMRTGSCGYGANCRYNHPR 75 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.6 | 4.4e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ OIT31831 96 EPMCQYYLRTGTCKFGASCKFHHPK 120 789********************96 PP | |||||||
3 | zf-CCCH | 33.7 | 6.1e-11 | 142 | 166 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++tG+Ck+G +Ck++H++ OIT31831 142 EIECSYYLKTGHCKFGITCKYHHPQ 166 568********************97 PP | |||||||
4 | zf-CCCH | 37.5 | 4.1e-12 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H+p OIT31831 296 PGQPTCQYYMKTGDCKFGSSCRYHHPP 322 57899********************97 PP | |||||||
5 | zf-CCCH | 27.8 | 4.4e-09 | 343 | 368 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++ G+Ck+G CkF H++ OIT31831 343 GVQPCSFYLLKGFCKFGRACKFDHPM 368 6789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence |
MELYGRSTGS NGSQSDHQSE WVPVEQETAL DESMQRLGLW GREIYPERPG VPDCSYYMRT 60 GSCGYGANCR YNHPRDRAYG GKMQLERVEF PERLGEPMCQ YYLRTGTCKF GASCKFHHPK 120 NLGGSLSNIP LNTHGYPLRP GEIECSYYLK TGHCKFGITC KYHHPQTAGI SVPAPARPFY 180 PTVQSLPAPP EEYNSASTGL RVARPPLLPG SYVPSAYGPV LLHPGVVTIQ NWSPYSGPVS 240 PALSPGAQPS AGVTSIYGIS QLASSTHAFA GTYSPLHSAA SPSSKTQKEK SFPERPGQPT 300 CQYYMKTGDC KFGSSCRYHH PPDWIASKTN CAISPLGLPL RPGVQPCSFY LLKGFCKFGR 360 ACKFDHPMGT VQYSSSASSL PDLPIAPYML RSSFAFAPTL LPELQAGFVS GSKVDAASLS 420 RPSSSLKVQL VALT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-180 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT31831 |