PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31469

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 508aa MW: 56404.2 Da PI: 8.1426

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31469	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.2e-41	216	291	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q OIT31469 216 CQVHGCNKDLSSSKDYHKRHKVCDEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 291 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MEPLSYGLEG RGFLFPDNVE LSVDTFSRSR NTVKDWNLNP FCDVDKPICG PSQEITESTG 60 FLESGIADIF KKSAASNPCP GALSGEIGNG SMLELGAMFN RSATKSCNPM SLPIGLKLDE 120 LTDYGEVRTS QSSKESSVLS SPESSLPTGE AAKRKSLHSQ FPISQVRGQK EDESIAYREV 180 KSNQSLKRNS ALSSVNSSLQ GKRLRTTNLH SEVPFCQVHG CNKDLSSSKD YHKRHKVCDE 240 HSKTAIVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTHWGSRF 300 LDMTQRRVPF LFPEILPGSF FYQENYEVNN NNQHLKLERK PFCISQLAMS VTSGQSPAES 360 IQHQYGVRKQ DLSKVPVGST LLSVQEFSAG QNSSCALSLL SAHSQNLLRN STGISPTPLW 420 MVKGDDHAYI KDDHHNLAKS PSISVPEMQR DGHDQGANSM NSKNCLSPVG GPTMDLVQLS 480 SHLLRVEQQK NSVQVKQEND IFSSFAST

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MEPLSYGLEG RGFLFPDNVE LSVDTFSRSR NTVKDWNLNP FCDVDKPICG PSQEITESTG  60
FLESGIADIF KKSAASNPCP GALSGEIGNG SMLELGAMFN RSATKSCNPM SLPIGLKLDE  120
LTDYGEVRTS QSSKESSVLS SPESSLPTGE AAKRKSLHSQ FPISQVRGQK EDESIAYREV  180
KSNQSLKRNS ALSSVNSSLQ GKRLRTTNLH SEVPFCQVHG CNKDLSSSKD YHKRHKVCDE  240
HSKTAIVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTHWGSRF  300
LDMTQRRVPF LFPEILPGSF FYQENYEVNN NNQHLKLERK PFCISQLAMS VTSGQSPAES  360
IQHQYGVRKQ DLSKVPVGST LLSVQEFSAG QNSSCALSLL SAHSQNLLRN STGISPTPLW  420
MVKGDDHAYI KDDHHNLAKS PSISVPEMQR DGHDQGANSM NSKNCLSPVG GPTMDLVQLS  480
SHLLRVEQQK NSVQVKQEND IFSSFAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-54	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT31469