PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT31155
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 340aa    MW: 38287.5 Da    PI: 6.7288
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT31155genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15265289226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               ktelC+ +++tGtC+yG++C+FaHg
  OIT31155 265 KTELCNKWQETGTCPYGENCQFAHG 289
               9***********************8 PP
2zf-CCCH19.41.9e-06302327126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               ykte Cr  +++  C+yG rC+F H+
  OIT31155 302 YKTEVCRMVLAGDMCPYGHRCHFRHS 327
               9**********55**********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MQNENPSSDG LNSSTADAAT VPSGNKNYTC SDATSPHVAH NPFLSPTSTH QFDSSEFTPN  60
FYSTFSRSSN SPSLTSFDDI DDIATDDRLH QASYILEYQQ LYNRYTLCLA HLQESIKEVE  120
ALHQENESLR LVNSDLDRRL SLLTQATIQN CLLSDFNRFG LGANRDAQIS DPRPPNIRPG  180
NVIEPNRPER RNVERVSLPK SISVRSSGYL KLKAQGGKNE GPSQGKTRQK ATNPPLAESQ  240
RVYVPGSKKE EEAVEFEVYN QGMLKTELCN KWQETGTCPY GENCQFAHGI TELRPVIRHP  300
RYKTEVCRMV LAGDMCPYGH RCHFRHSLTE EERRTGPSLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-69C3H family protein