PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT31042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 25132.6 Da PI: 9.7726 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.1 | 5.5e-19 | 3 | 51 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51 n+ +r+v + R ++++KKAeELSvLCd+e+ +i+fs++ + +ye++s OIT31042 3 NEHRRSVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDkkNAVYEWPS 51 889**********************************9722669***96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence |
MVNEHRRSVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DKKNAVYEWP SRDKFKQLLM 60 RYLDKPLVER LKKLTTNEMF LMKEMDAKMK IIEQQKTEEK EMEQLFSQLY LGEKTVFDLD 120 KRQLIGVRNL AIKAKEKAVK RRIQLKYLQD QRLSLPIDRI PLRVAPFNVQ DQRIQLPVDD 180 PLALRLAPLN IQDQRLQLPV DDPLALRLAP PEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14210.1 | 4e-11 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT31042 |