PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT30953

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 529aa MW: 59428.8 Da PI: 8.0085

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30953	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.4	6.3e-19	170	260	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f k l++s+v++ ++ lp +f+++h ++++ ++le+e+g+++e+k+i +k++ l++GW++++ a++L egD++vF+l+ ++f +v v+r+ OIT30953 170 FMKLLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESETGEEFEIKYIAEKTG----LSAGWRKYCTAHKLVEGDVLVFQLVAPTRF--KVYVIRA 260 899******************99953..45567***********777777....*********************9987777..8888775 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MKIKVVHRSE PPTQEHRISY PDTPKKEVFD EEPLGTQLPE PEPEPEPDSA IPNSSKDNNL 60 ILVDASNPIN SVTPSAQTLS SSLLGKRRRK PKEIIDQISP IPFRRKRAIK KQPSASQSNN 120 AVADAEGKSI ITKQERATAD GSGSATQMKS PIIIRAEEFL SSIGNEYPSF MKLLVRSHVG 180 SCFWMGLPVP FCKNHLPRKD TPVILESETG EEFEIKYIAE KTGLSAGWRK YCTAHKLVEG 240 DVLVFQLVAP TRFKVYVIRA NDLKEVDGAL SLLNLDAPPK QSDAEGASAH NLKKRQKKSL 300 PLTVVHRRRR KADLSKQLLA LEAQSGNDSD EVASEILEGS RSSGLAVNFR DIKSLEEFHI 360 LVNGVCIDSE LPEDIRRKYY ELCCNKSAFL HDRLLQGLHC KLVAGVIFEV VNIADAIRAC 420 KLTTQRTEFD IWEKSLKSFE LLGMNVGFLR TRLRWLVSLA FDSEGASDTK RYWEAKNEWS 480 RAEDEIRNLE TKLVELKKTS EKYGADVEAL KSKAESYELM FQGEVNAPW

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MKIKVVHRSE PPTQEHRISY PDTPKKEVFD EEPLGTQLPE PEPEPEPDSA IPNSSKDNNL  60
ILVDASNPIN SVTPSAQTLS SSLLGKRRRK PKEIIDQISP IPFRRKRAIK KQPSASQSNN  120
AVADAEGKSI ITKQERATAD GSGSATQMKS PIIIRAEEFL SSIGNEYPSF MKLLVRSHVG  180
SCFWMGLPVP FCKNHLPRKD TPVILESETG EEFEIKYIAE KTGLSAGWRK YCTAHKLVEG  240
DVLVFQLVAP TRFKVYVIRA NDLKEVDGAL SLLNLDAPPK QSDAEGASAH NLKKRQKKSL  300
PLTVVHRRRR KADLSKQLLA LEAQSGNDSD EVASEILEGS RSSGLAVNFR DIKSLEEFHI  360
LVNGVCIDSE LPEDIRRKYY ELCCNKSAFL HDRLLQGLHC KLVAGVIFEV VNIADAIRAC  420
KLTTQRTEFD IWEKSLKSFE LLGMNVGFLR TRLRWLVSLA FDSEGASDTK RYWEAKNEWS  480
RAEDEIRNLE TKLVELKKTS EKYGADVEAL KSKAESYELM FQGEVNAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	107	KRRRKPKEIIDQISPIPFRRKR
2	86	110	KRRRKPKEIIDQISPIPFRRKRAIK
3	87	108	KRRRKPKEIIDQISPIPFRRKR
4	88	109	KRRRKPKEIIDQISPIPFRRKR
5	293	314	KRRRKPKEIIDQISPIPFRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-37	B3 family protein

Link Out ? help Back to Top
Ensembl	OIT30953