PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30153

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 462aa MW: 50686 Da PI: 6.6501

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30153	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.7e-06	350	388	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L OIT30153 350 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 388 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MAEEFQLGRG NWWESSSSSS TTSSSRNNKF ESGILSSTTT TMPSVSTALN SMASNFGCWP 60 TEIEDIKARS SLNPVSVSGS DNSSMVFPAD PQKLHASESG GLNLQVMGLG LPSQGLDWNQ 120 PFFRGEKAGS GFRSILEEGL SSDANYQQEG SCQQDHHWTQ KIYTGNDYNN KQMDRGISLD 180 HQPVFNAPNM SSNLDNAPYG SPSNMLQGLL ISDSHQESNF TSTRSLYYPP YNPSNCDVNP 240 AAADVMPTSS ASSSWSKFPK QQWPMPPPHG QSHFSGTPFW NATSAAMDDV RSGFQLPSIH 300 QQLPNPTVDT KPKHTAEDRN IRTIAKKSGS EMSNKRPRNE APSQMPAFKV RKEKMGDRIT 360 ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVNVLSTPYM KSGASMQQHQ QSTGDKSNVN 420 PEGAKQDLRS RGLCLVPVSS TFPVTHETTV DFWTPTFGGT FR

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MAEEFQLGRG NWWESSSSSS TTSSSRNNKF ESGILSSTTT TMPSVSTALN SMASNFGCWP  60
TEIEDIKARS SLNPVSVSGS DNSSMVFPAD PQKLHASESG GLNLQVMGLG LPSQGLDWNQ  120
PFFRGEKAGS GFRSILEEGL SSDANYQQEG SCQQDHHWTQ KIYTGNDYNN KQMDRGISLD  180
HQPVFNAPNM SSNLDNAPYG SPSNMLQGLL ISDSHQESNF TSTRSLYYPP YNPSNCDVNP  240
AAADVMPTSS ASSSWSKFPK QQWPMPPPHG QSHFSGTPFW NATSAAMDDV RSGFQLPSIH  300
QQLPNPTVDT KPKHTAEDRN IRTIAKKSGS EMSNKRPRNE APSQMPAFKV RKEKMGDRIT  360
ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVNVLSTPYM KSGASMQQHQ QSTGDKSNVN  420
PEGAKQDLRS RGLCLVPVSS TFPVTHETTV DFWTPTFGGT FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-60	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT30153