PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30138

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 552aa MW: 61399.7 Da PI: 7.797

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30138	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l OIT30138 59 KGGWTPEEDDTLRRAVAVYRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	61	2.5e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l OIT30138 111 KGPWTQEEDDKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	55.7	1.1e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++ OIT30138 163 KDAWTLEEELALLDAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MDELKIEDCC TENKQSTAAS ASSVSENSGS VTVKSLEVCS PTPTSPAHRR TTGPIRRAKG 60 GWTPEEDDTL RRAVAVYRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALLDAHRI 180 YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGN LPSVGRDGLQ NGCKDTTGTA 240 SAEKALVYSH KGSDSTELAS SGTTDVCKIE NCDKNHQDAK LLVANIDASN SGPKNESADS 300 EVVRWEAESP VMDSIHVKQI KEIKFEGYGK TSEVDQFKVI ETPFSCEIPT YGTLYYEPPQ 360 LESCISMDSD HLNIRRAHCE SDSSPSLSPS SFLTPPSSLK GSSLYSQTPE SILKTAARSF 420 PNTPSIFRKR KLNYTPGNKI GNADGDTHKD EVHDACEDKQ TDSSEKYVMI RGSSSKNPSY 480 NGIGPCDTQA FNASPPYRIR SKRKSIFRSV EKQLKFAFDN EQHNTSTGIN DSTVKEISHV 540 ADCLRATRMG IT

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MDELKIEDCC TENKQSTAAS ASSVSENSGS VTVKSLEVCS PTPTSPAHRR TTGPIRRAKG  60
GWTPEEDDTL RRAVAVYRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALLDAHRI  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGN LPSVGRDGLQ NGCKDTTGTA  240
SAEKALVYSH KGSDSTELAS SGTTDVCKIE NCDKNHQDAK LLVANIDASN SGPKNESADS  300
EVVRWEAESP VMDSIHVKQI KEIKFEGYGK TSEVDQFKVI ETPFSCEIPT YGTLYYEPPQ  360
LESCISMDSD HLNIRRAHCE SDSSPSLSPS SFLTPPSSLK GSSLYSQTPE SILKTAARSF  420
PNTPSIFRKR KLNYTPGNKI GNADGDTHKD EVHDACEDKQ TDSSEKYVMI RGSSSKNPSY  480
NGIGPCDTQA FNASPPYRIR SKRKSIFRSV EKQLKFAFDN EQHNTSTGIN DSTVKEISHV  540
ADCLRATRMG IT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-134	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT30138