PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30062
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 356aa    MW: 39512.1 Da    PI: 7.3078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30062genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000472202581255
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  OIT30062 220 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 258
               6677889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MNRGVMQKSP VQQMMGGSPN WWNINNMRPP ISHQQIAATV PSLLAPNNNH FSPTVAFPSS  60
SSLPPWNDNQ EQLPESWSQL LLGGLAGEEE KSVHLSNMQA VKKLENNWEE KSTFLSQAAD  120
SVIDVNQKNF MYEHVNNVDF HHQTEITGKP TWSQMMPLSS PKSCVTTLSS NMLDFSNNKS  180
DTRHPPPDHS SECNSRATSG APNKKARVQP SSTQSTFKVR KEKLGDRITA LHQLVSPFGK  240
TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQH QQSVQERNSL FPEDPGQLSN  300
DNCLKRKAIS EQDYQEESKK DLRSRGLCLV PLSCTLQVGS DNGADYWAPA FGGGFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-100bHLH family protein