PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30025

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 457aa MW: 50602.8 Da PI: 8.117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30025	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.7e-16	234	280	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq OIT30025 234 VHNQSERRRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVINYLKQLQ 280 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MSHCTVPTWN PRHQRQEQTV EAEEANQYPH VHNQQNQINH FMPMSKCEKV AELTWENRQI 60 GMHGVGGILS MSETKPTTLG RAGDTLESIV HQATYHGQNQ TSIQNYDQNQ NLKIGMCVGK 120 WGESSQHQMA PGATVLAKKR MRSESEPQYF GKLVGEDEYA ERSACASASA TFCRENDTTM 180 VTWPSFDESS RSIKSKTTCD EDSACHDGGS QENKEEEHET KRSNSSRRSR AAVVHNQSER 240 RRRDRINQKM KALQRLVPNA SKTDKASMLD EVINYLKQLQ AQVQLMSSVR NMAPQMMMPL 300 GMHQHIQMSL LARMGMGVGL GMGMGMFDMT ALARAAAAPP HQSLTTHPLI HTNPIATTPT 360 NPFIPSAFAM PAAPAIPSAA QANTVGRVTT AVTPATTTTS NSAPFTDPYS AFLTQSMDME 420 YFNNMAALYR QQANNHSTQT TGSKLNQGNL NIQGQRE

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MSHCTVPTWN PRHQRQEQTV EAEEANQYPH VHNQQNQINH FMPMSKCEKV AELTWENRQI  60
GMHGVGGILS MSETKPTTLG RAGDTLESIV HQATYHGQNQ TSIQNYDQNQ NLKIGMCVGK  120
WGESSQHQMA PGATVLAKKR MRSESEPQYF GKLVGEDEYA ERSACASASA TFCRENDTTM  180
VTWPSFDESS RSIKSKTTCD EDSACHDGGS QENKEEEHET KRSNSSRRSR AAVVHNQSER  240
RRRDRINQKM KALQRLVPNA SKTDKASMLD EVINYLKQLQ AQVQLMSSVR NMAPQMMMPL  300
GMHQHIQMSL LARMGMGVGL GMGMGMFDMT ALARAAAAPP HQSLTTHPLI HTNPIATTPT  360
NPFIPSAFAM PAAPAIPSAA QANTVGRVTT AVTPATTTTS NSAPFTDPYS AFLTQSMDME  420
YFNNMAALYR QQANNHSTQT TGSKLNQGNL NIQGQRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	244	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-38	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT30025