PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29990
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 813aa    MW: 90323.7 Da    PI: 6.3034
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29990genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23179280199
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++ l+++
  OIT29990 179 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEGGDLRLG 276
               99****************************86333.45679************************************************..4489999**9 PP

               EE-S CS
        B3  96 vfrk 99 
               ++r+
  OIT29990 277 IRRA 280
               9986 PP
2Auxin_resp120.31.5e-39305386182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+aas ks+F+v+Y+Pras+++Fvv+++k++k++++++ vG+Rfkm+f+ +ds+err+sG+v+g+sd+dp+rWpnSkWr+L
    OIT29990 305 VATAASAKSTFHVFYSPRASHADFVVPYQKYMKSINSRIPVGTRFKMRFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCL 386
                 6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    
MEIDLNHAVV SEVEKNACCN GECDKKGVGG SCVNCNLSTT STSSCSSNAS SSSSSSLTLS  60
SIYMELWHAC AGPLTSLPMK GNVVVYFPQG HMEEAVSVSP FSPIKMDFPT FGLQPQIFCR  120
VEDVQLLANK ENDEVYTQLT LLPLPESVAI SLKGKEHEDL GVDEEGNGVN PGKSASHMFC  180
KTLTASDTST HGGFSVPRRA AEDCFPPLDY KEQRPSQELI AKDLHGVEWK FRHIYRGQPR  240
RHLLTTGWSI FVSQKNLVSG DAVLFLRGEG GDLRLGIRRA ARPRNGLPES IIKSQYSGSD  300
VLSAVATAAS AKSTFHVFYS PRASHADFVV PYQKYMKSIN SRIPVGTRFK MRFDLDDSPE  360
RRYSGVVTGI SDMDPFRWPN SKWRCLMVRW DEDIMSNHQE RVSPWEIDSS VSLPPLSIQS  420
PRLKKLRTNQ QAPSLDSHFA GGSALLDFEE SVRSSKVLQG QENLGLISPP YGCDKTVRPL  480
DFELQNVARH NLMPTGIENI IVGDFVKTQP PTTYTGFLES NRFPKVLQGQ EICSLRSLTG  540
KGDVNFGAWG KPEFGCNVFS TYQRPKTNFY PLASEGARNV FLPYNAMYRA GQDPVVHSYI  600
NNNFQRENPT SNQNSIQNGV RREEGGMQKF ANEQRPLEMS ILSIPETNFK NENGGSLNAQ  660
ASCKLFGFSL IKEPSTPSSH SSGKRSCTKV HKQGSLVGRA IDLSRLNGYE DLLVELERLF  720
NMEDLLRDPN KGWRILYTDS ENDMMVVGDD PWHEFCEVVS KIHIYTQEEV EKMTIEGISD  780
DTQSCLEEAP AFMDASKSSS VGQPDSSPTV IRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein