PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29648

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 297aa MW: 33147.4 Da PI: 6.6268

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29648	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.8e-18	127	181	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ L+k+l+L rqV vWFqNrRa+ k OIT29648 127 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK 181 788899***********************************************98 PP
2	HD-ZIP_I/II	125.6	2.2e-40	127	216	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l OIT29648 127 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVTELR-AL 216 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MGGEKEDGLG LSLSLGMGCP KNNLKNDFIS PSTPPFLLPF MHNHQISAER NEEARESIRG 60 EIDMNEPVRM IESCDEELED EGVIMVSSPN NSTVSSVSGK RSHDREDHEG ERPTSSLEDD 120 GGDAAARKKL RLSKEQAAVL EETFKEHNTL NPKQKLALSK QLNLRPRQVE VWFQNRRART 180 KLKQTEVDCE YLRRCCENLT EENRRLQKEV TELRALKLSP QMYMNMTPPT TLTMCPQCER 240 VAVSSSSSSA ASSSVTGAGV SRSNHPVGAL HQPPVPLNKP WAAIFSPKPL DVQRTQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	8e-75	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT29648