PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29633
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 308aa    MW: 34926.4 Da    PI: 6.1035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29633genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69e-08326226
              -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
              k++lC+ffar G C  G+ C F H+
  OIT29633  3 KRVLCKFFAR-GACLKGEHCDFLHD 26
              99********.*************6 PP
2zf-CCCH231.4e-073454526
              --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               C ++++ G+C +G+rC++ H+
  OIT29633 34 VCTYYQK-GICAFGSRCRYEHV 54
              5******.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MSKRVLCKFF ARGACLKGEH CDFLHDSEDV PNNVCTYYQK GICAFGSRCR YEHVKITRSQ  60
PSLPSSSANI VELKRVNATD QSICSSSTAG NCPQGKKEEH MKTCETREKQ LDLLKHSQEI  120
ECGVCLECVL SKTIMAERKF GILSECDHPF CISCIRNWRS SSPSIGMDVN STLRACPICR  180
KHSYFVIPSV IWYSTKEEKQ EIINSYKAKL RSIDCKNFDF GNGTCQFGAS CFYKHTVKPG  240
SKLWNSTLKP DLRGSSFSDA DETESGFDGD MESFRALFED YRDDDLEEFA EAMAFMLWLR  300
DSDTSDDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-105C3H family protein