PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29537
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 583aa    MW: 65263.8 Da    PI: 6.7644
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29537genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.54.4e-1302135821373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cA+a+++++l    +l+a+ ++  s +gdp+qRl ay++e+L ar   s++++y+al+++e +     + l+++++++e++P+lkf++++aN a
  OIT29537 213 LKQLLIACARALAENKLDDFGSLIAKARNAISITGDPIQRLGAYMVEGLVARKEASGTNIYRALRCKEPA---GRDLLSYMHILYEICPYLKFGYMAANGA 310
               689******************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + l  +g+rL+++ e++++p+ef++ v     +++ ++L+v+pgE
  OIT29537 311 IAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLALVGKRLTDISEKFNIPVEFHA-VPVFAPEVTRDMLDVRPGE 410
               *************************************************999999**************************.6888999************ PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               alaVn+ l lh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F+ rfleal+yy a+f+s++++l r+ +eri+vE+++l+r+ivnv+ace
  OIT29537 411 ALAVNFPLVLHHTPDESVDVTNPRDELLRMVKSLSPKVVTLVEQESNTNTAPFFPRFLEALDYYCAMFESIDVTLERDRKERINVEQHCLARDIVNVIACE 511
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               g+er+erhe l+kW+ r+++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  OIT29537 512 GKERVERHELLGKWKLRFTMAGFRQYPLSSYVNSVIKRLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582
               ****************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    
MESHHLYEYG VTGANLSYSY SKATTPSLPN RLLGTLKFDS RNSPNSPFVN YFDPDTPTTL  60
SDSLEQHSST ENISGTSPSS NSSLDYNHYF HRPSPSPNFH PNTLLVRSGE TSLLQYANHS  120
QNMKNALLQL ETALMGPEEE TTTSSPSAGD IKQPQTSGQR SWMWNQEDQI SLRFETQPSH  180
VSAFGISSSG IHSEKRHKAT EDLSLRGIPS GNLKQLLIAC ARALAENKLD DFGSLIAKAR  240
NAISITGDPI QRLGAYMVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM HILYEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPH VRITGIDDPV  360
SKYARGDGLA LVGKRLTDIS EKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLVL  420
HHTPDESVDV TNPRDELLRM VKSLSPKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES  480
IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS  540
SYVNSVIKRL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein