PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29494

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 377aa MW: 42105.9 Da PI: 6.5073

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29494	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d++k G g W+ +++ g++R++k+c++rw++yl OIT29494 14 KGAWTPMEDKILIDYIKVNGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.5	4.6e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ OIT29494 67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGRKPCCSKE GLNKGAWTPM EDKILIDYIK VNGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKLQQGV 120 SLGQPNCITS SINRQRPGSS HVKSSKSGPV TQLNKNNHEH TDPQDSQYLL TDVGLGGSSS 180 SSSPCLVVRT KAIRCTQVFI SPPPTTSSVA EPLNVDQSHN QRASNSHSVF PPCTRINTQR 240 FHVDNSILDN DNDDKVMAED LEIENATTIV ASSSSSVSSL SEQQQPISGS TPTFSEELEN 300 YNFNFMFGFD MDDPFLSELL NAPDICENLE NTTTVGDSCS KNEKERSYFP SNYSQTTLFA 360 EETQHNDLEL WINGFSS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGRKPCCSKE GLNKGAWTPM EDKILIDYIK VNGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKLQQGV  120
SLGQPNCITS SINRQRPGSS HVKSSKSGPV TQLNKNNHEH TDPQDSQYLL TDVGLGGSSS  180
SSSPCLVVRT KAIRCTQVFI SPPPTTSSVA EPLNVDQSHN QRASNSHSVF PPCTRINTQR  240
FHVDNSILDN DNDDKVMAED LEIENATTIV ASSSSSVSSL SEQQQPISGS TPTFSEELEN  300
YNFNFMFGFD MDDPFLSELL NAPDICENLE NTTTVGDSCS KNEKERSYFP SNYSQTTLFA  360
EETQHNDLEL WINGFSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-61	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT29494