PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29376

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 277aa MW: 31086.5 Da PI: 8.4626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29376	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	215	237	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L H ++ H OIT29376 215 QCPQCHLRFSTVKALIDHVQKiH 237 7******************9988 PP
2	zf-C2H2	15.4	5.2e-05	249	271	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L+ H + H OIT29376 249 VCPRCSKGFRDPVALVEHVEReH 271 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MGTPAFPNLG KHCSVEDCRL IDFLPFTCDC CHKVFCLEHR SYNRHECPTA NKNNVTVVIC 60 PLCAKGVRLI PDEDPNITWG SHVNTECDPS NYEKATKKKK CPVPRCRELL TFSNTIKCRD 120 CTVDHCLKHR FGPDHNCPGP KKPEAAFPFM NFLNASKEEP KKAQSTSSSR WTTSLFKVVS 180 SVKEKLSNEF SQTQQTGQSS RVTSHSANTS SQVEQCPQCH LRFSTVKALI DHVQKIHEKN 240 GVMNLAVDVC PRCSKGFRDP VALVEHVERE HKGTSKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-118	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT29376