PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29059

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 495aa MW: 54535.3 Da PI: 9.277

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29059	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	67	87	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H OIT29059 67 CEICNKGFQRDQNLQLHRRGH 87 *******************88 PP
2	zf-C2H2	12.8	0.00037	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OIT29059 142 WKCEKCSKKYAVQSDWKAHSKTC 164 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MMSGDVFSFP SSVKAVLPQH ELQTNPNPKP NPSSSKKRRN LPGTPDPDAE VIALSPKSLM 60 ATNRFLCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKDE IVKKKVYICP EKTCIHHDAS 120 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK 180 DSFITHRAFC DALAEESSRI TSVGANNMNF PNINDTLLNQ QSNLHGISQI GTFYRPEFGN 240 MATGNSLNQQ QQKPRLSLWL DQANDNPLQI MSANSNIFES TTTSGFVDMM QMPSSNVFGS 300 SSTAANFSLS SSQGTSMAET LSSLYSDSTQ NNHLAKSSTP MSATALLQKA AQMGSTKSNQ 360 STFFSNSFNL MSSSSSSPSN TPTFSSLHSS ETTDQKFPKI SEDYTVSLAE GNGGLILCTN 420 FSSSANTKAI NLDQAIMQTV GMQTPAVPMN MQQGMNNCLT RDFLGIRNEP FLSQEMAKFA 480 SMSSAMGLSH YSSSH

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MMSGDVFSFP SSVKAVLPQH ELQTNPNPKP NPSSSKKRRN LPGTPDPDAE VIALSPKSLM  60
ATNRFLCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKDE IVKKKVYICP EKTCIHHDAS  120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  180
DSFITHRAFC DALAEESSRI TSVGANNMNF PNINDTLLNQ QSNLHGISQI GTFYRPEFGN  240
MATGNSLNQQ QQKPRLSLWL DQANDNPLQI MSANSNIFES TTTSGFVDMM QMPSSNVFGS  300
SSTAANFSLS SSQGTSMAET LSSLYSDSTQ NNHLAKSSTP MSATALLQKA AQMGSTKSNQ  360
STFFSNSFNL MSSSSSSPSN TPTFSSLHSS ETTDQKFPKI SEDYTVSLAE GNGGLILCTN  420
FSSSANTKAI NLDQAIMQTV GMQTPAVPMN MQQGMNNCLT RDFLGIRNEP FLSQEMAKFA  480
SMSSAMGLSH YSSSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-103	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT29059