PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28954
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 268aa    MW: 30746.6 Da    PI: 8.1289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28954genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  ++ ++G  +W+  ++  g  Rt+k+c++rw +yl
         OIT28954 20 KGAWSPEEDQKLRAYIMKYGIWNWSQMPKFAGISRTGKSCRLRWVNYL 67
                     79******************99**********99************97 PP
2Myb_DNA-binding40.37.5e-1373118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE e+ v+  ++ G++ W++Ia++++ gRt++++k+ ++++l
         OIT28954  73 RGPFSMEEVERVVKMYQEVGNR-WSAIAARLP-GRTDNEVKNLFHTHL 118
                      89********************.*********.*********988875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MPRVPPQQQQ KSTNMEEIKK GAWSPEEDQK LRAYIMKYGI WNWSQMPKFA GISRTGKSCR  60
LRWVNYLSPD VKRGPFSMEE VERVVKMYQE VGNRWSAIAA RLPGRTDNEV KNLFHTHLKK  120
HLGVKKSTRA RSNKRVVKKA KGNEKTNTIK AHKRLVNTSL LSPDVSSPCS STITCEENQM  180
MDVVNFSQTY LNCYSVSSLH DQSDINVENT VIFESNPEID ENIGVDDSDQ LCHQFDQYSH  240
ACSISDIDTS STDQFDMNSF WLDIIRGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-47MYB family protein