PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT28908

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 327aa MW: 35686.5 Da PI: 8.43

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28908	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	25	101	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCevhsk+++v++ g+ qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ OIT28908 25 CLVDGCNADLSQCREYHRRHKVCEVHSKTAKVTIGGRDQRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 101 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MESSSSSGSS KRAKAPGNIA QVAHCLVDGC NADLSQCREY HRRHKVCEVH SKTAKVTIGG 60 RDQRFCQQCS RFHSLVEFDD GKRSCRKRLD GHNRRRRKPQ PDSMAKTSGL LFTGQQGTKL 120 LSFSSQQIFP SAAAWAGVVK TDNNMVLYNN QSHINCMDNQ NSFPDTSARS YKGGNQFQFM 180 QGSDRSLPEA SICQPLVDHP NSAAAAVPNS GQKIFSSGLN EIVDSDRALS LLSSAPAVTR 240 EIGFSHMVQQ PASIPRSQSQ SVVHSLHYGG LSQYPFAQDF NSQPQDSAAD SHVSNNSSLH 300 FHDMLQNGPD GSSTSGGCQQ TLAFMWD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	99	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-50	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT28908