PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28870

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 459aa MW: 50633.5 Da PI: 6.4394

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28870	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.4e-08	324	371	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OIT28870 324 SHSLAERVRREKISQRMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 371 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MDKDYFSNGG IPPLLHFEPK IPLNSLFSPH ELDSALSSMV SSPVASNSVN SNDNFALHEL 60 AGKLGTICSS PPPQFTDYAV NYDHINNINN SDSTMTSCYS TPLNSPPKLR DNIPIFDISV 120 PVNPPQFPTF SANPEFSHRA AKFSCFGSSS FNGRTSQFGL NNTELSHRSS TGPMGSEKLS 180 RISSSPSLVL QNKNSGQTQV EMMCENLDLG KISGPNNANS NEDCSVSEQI PSGEMASKTS 240 NVLNSRKRKA VSRGKGKNYN EVGVDTKEKR SKSTEGNGKK NGTVKMEEIN GSEGDENEKE 300 TKEEQKPTKD WIHVRARRGE ATDSHSLAER VRREKISQRM KFLQDLVPGC NKVTGKALML 360 DEIINYVQSL QRQVEFLSMK LASMNPRMDF HIDNFLSKDI CQPNGSLPQQ VFPLDGFCEN 420 LTQLHTICED ELQTIVQMGL SHQDLTLQSQ AFPAPNSTS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MDKDYFSNGG IPPLLHFEPK IPLNSLFSPH ELDSALSSMV SSPVASNSVN SNDNFALHEL  60
AGKLGTICSS PPPQFTDYAV NYDHINNINN SDSTMTSCYS TPLNSPPKLR DNIPIFDISV  120
PVNPPQFPTF SANPEFSHRA AKFSCFGSSS FNGRTSQFGL NNTELSHRSS TGPMGSEKLS  180
RISSSPSLVL QNKNSGQTQV EMMCENLDLG KISGPNNANS NEDCSVSEQI PSGEMASKTS  240
NVLNSRKRKA VSRGKGKNYN EVGVDTKEKR SKSTEGNGKK NGTVKMEEIN GSEGDENEKE  300
TKEEQKPTKD WIHVRARRGE ATDSHSLAER VRREKISQRM KFLQDLVPGC NKVTGKALML  360
DEIINYVQSL QRQVEFLSMK LASMNPRMDF HIDNFLSKDI CQPNGSLPQQ VFPLDGFCEN  420
LTQLHTICED ELQTIVQMGL SHQDLTLQSQ AFPAPNSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-66	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT28870