PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28841

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 552aa MW: 61324.4 Da PI: 5.5123

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28841	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.1	1.6e-16	227	286	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++t+e+Aa+a++ a++k++g OIT28841 227 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 286 78*****************655454478446***********************98 PP
2	AP2	46.5	9e-15	331	380	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OIT28841 331 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 380 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MSTWLGFSLS PDFNIGDDDE EEVIKDYQSR NENQATGNDA NLVEETPLSV MPSTYPFPRC 60 DTTTEDCWRY ENHEMNSATN PNEEGPKLED FLGCCYSNSP PDHEQQIAEI NVNIPPTVNP 120 SDHEQQFQVM VPNGQFQSFN EFANSTTSVY HLPFDGATSV SGFKSWLRQS AAAAPLISSA 180 EENSTNNCQT LSLAAAPKKR PVAVKNVTGS REPVPRKSID TFGQRTSQYR GVTRHRWTGR 240 YEAHLWDNSC RKEGQTRKGR QVYLGGYDTE EKAARAYDLA ALKYWGPTTH INFPLNTYEK 300 ELEEMKNMNR QEFVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 360 FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS RYDVKRICSS STLIASDLAK RSPSKDSGVC 420 PSSFEDYNNS CTSSPQPILA ITNGEQLQQQ QPADNSFMDM APLMTAGSST RSSSNAPSPK 480 CSGSGSGSGS AELSCDFGVG LEYPQAYYSS INVQGHKFED ERKGNDENPQ SSGRIGNMEL 540 VNPVPMFALW NQ

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MSTWLGFSLS PDFNIGDDDE EEVIKDYQSR NENQATGNDA NLVEETPLSV MPSTYPFPRC  60
DTTTEDCWRY ENHEMNSATN PNEEGPKLED FLGCCYSNSP PDHEQQIAEI NVNIPPTVNP  120
SDHEQQFQVM VPNGQFQSFN EFANSTTSVY HLPFDGATSV SGFKSWLRQS AAAAPLISSA  180
EENSTNNCQT LSLAAAPKKR PVAVKNVTGS REPVPRKSID TFGQRTSQYR GVTRHRWTGR  240
YEAHLWDNSC RKEGQTRKGR QVYLGGYDTE EKAARAYDLA ALKYWGPTTH INFPLNTYEK  300
ELEEMKNMNR QEFVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  360
FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS RYDVKRICSS STLIASDLAK RSPSKDSGVC  420
PSSFEDYNNS CTSSPQPILA ITNGEQLQQQ QPADNSFMDM APLMTAGSST RSSSNAPSPK  480
CSGSGSGSGS AELSCDFGVG LEYPQAYYSS INVQGHKFED ERKGNDENPQ SSGRIGNMEL  540
VNPVPMFALW NQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-136	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT28841