PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28820

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 280aa MW: 31965.7 Da PI: 6.1635

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28820	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7e-17	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ede+l +++++ G g+W+t +++ g+ R++k+c++rw +yl OIT28820 22 RGPWTPQEDEILTNYINKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 69 89****************************99**********97 PP
2	Myb_DNA-binding	49.9	7.3e-16	75	120	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l OIT28820 75 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 120 67779***************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MRTPTSSKTK VTPCCSKVGL KRGPWTPQED EILTNYINKE GEGRWRTLPK KAGLLRCGKS 60 CRLRWMNYLR PSVKRGHISP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN EIKNYWNTHL 120 SKKLISQGID PRTHKPLINH NCSSDDQITN KASSSSPSSS SKLANDFNTI PNPIYIPFQM 180 EEPLRSININ HPGEITSLDD YQYQSNAILV NYDDDLNIVV EEDDEMNCCT DDVFSSFLNS 240 LINEDMFNSQ NQQITNGMFP DFDPLINPTQ DNQNNHQESG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-85	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT28820