PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28772
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 355aa    MW: 38905.4 Da    PI: 4.9
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28772genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16214250135
      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  OIT28772 214 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 250
               *****99999***********************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MEAANTRVIG FEEEYMNVAI RVDEYGGGGF DADDISGGCE SSGTEELQHV CSSVPPLAAS  60
PVVDTDGRVL VSMPMPSRRT SELTISFEGQ VYVFPAVTPD KVQAVLLLLG GSDMASYVPS  120
SHSLALQTIK SVDNDAPTRP NISRRIASLI RFREKRKERC FEKKVRYTCR KEVAQRMHRK  180
NGQFASLKDG EKTYAGNIDS GDSIPHPEPT LRRCQHCGIS ESETPAMRRG PSGPRTLCNA  240
CGLMWANKGM LRDITKGGRR TPFDKSEPRT PDIKLSTVAP ENSYQKQYQE DMQEASKNFV  300
DNSPVGIGSS SADIDEEQDN LDELANASGT EFEIPASFDE QIGIDSHMGA DWPGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-48GATA family protein