PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT28735

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 261aa MW: 27554.9 Da PI: 10.3876

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28735	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.3	5.4e-38	34	131	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa.kskk 99 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ss+ ++ sa+ +k+ OIT28735 34 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRSSSSSILTSSISAPlDHKQ 131 689******************************************************************888.23333333323333222222212222 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MSTSAEGNGA IIDPHQRQQQ QNPSGGGGTN GALTVKKPPV KDRHSKVDGR GRRIRMPIVC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTI PASFSTVSVS VRSSSSSILT 120 SSISAPLDHK QPPSSQPLIS PAPFILGKRL RPDDESIENG NKEDVGPAAT PVGPTSGFWA 180 VPARPDFGQV WSFAAAPPEM MAPTSAALSL QSSRFFQQQM GEASAARVGN YLPMTQGHLN 240 LLASLSGPPQ TSSGRRDDDG R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-80	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT28735