PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28597
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 453aa    MW: 49970.9 Da    PI: 6.0817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28597genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08360400954
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r+RR++i +++  L++++P        K++ a++L +A +Y+k L
  OIT28597 360 ARQRREKISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 400
               69******************95.....5****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    
MDTLDWDVTQ VIRSASSSWK NQQQQMIKDS LMMSNSYLFT PVSSKADSLI NPIQQQCHDI  60
GYLKAPLAMI LQEFGAAFDP IHVLSSWNIP QRQEAATRLA ADSVAAKSGA GSSRDCTKMG  120
PSSFSPLSNM LYFGNDQLAA CGLVADDLGS NNGQLTKSRS LDCLLSANNT SNYTDTSVED  180
DGISMIFSDD SKSSWNNNND NIAVSAGESA IDAFNSKPID ANDSNNIECP VNETDQHNNP  240
IRSSEAKRHM TKRRYNRALL QPDSSSRDSG FQLISEIQPK SKKPRSENKL PSSANINFQQ  300
SSSSASSADD EPDSEAITQM KEMIYCAAAF RPMSFGTEVE AEKPKRKNVR ISTDPQTVAA  360
RQRREKISEK IKILQKMVPG GSKMDTASML DEAANYLKFL RSQIKAMEAF GYKIDPLIMT  420
NISSLSSIPF NYPFSMQPHF PLQLANPVQR PYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-63bHLH family protein