PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28506
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 543aa    MW: 60769.6 Da    PI: 5.8493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28506genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.51.8e-1291745432374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               +elL +cAeavs+ d + a+ l++ l++++s +g+pm+Rl ay++e+L+arl++s+s +yk+l+++e +   sse l+++++ ++++P++kf+++ aN  I
  OIT28506 174 KELLDACAEAVSDADISTAEILMNILEQRVSVSGEPMERLSAYVLEGLRARLLSSGSIIYKKLKCKEPT---SSELLSYMQVIYNMCPYYKFAYMSANVVI 271
               78999***************************************************************9...9**************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp +RiTgv++++s   +   l+ +gerLa++A+++gvpfef+  +a +  +++le+Lrv++gEa
  OIT28506 272 REAMTNENRIHIIDFQIAQGSQWMFLLHDLARRPGGPPFVRITGVDDSQSAhaRGGGLQLVGERLAEVAKSCGVPFEFHG-AALSGCEVQLENLRVRHGEA 371
               ***********************************************9988889999***********************.8999**************** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf e+l+yy+a+f+s++a  pr++++ri+ E+++++r+ivn++aceg
  OIT28506 372 LAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESIDAARPRDDKQRISAEEHCVARDIVNIIACEG 472
               ***************************************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               a+r+erhe ++kWr rl++aGF+p pls ++ ++++ +l++++ + yr  e++g+l+lgWk+r+L + SaWr
  OIT28506 473 ADRVERHELFGKWRLRLMMAGFTPCPLSPSVGETINDILKEYSPN-YRFAESEGALYLGWKNRALATSSAWR 543
               *******************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    
MQASQRPQMS GGVHGLYNQP MQQVEQYYAP YHVFKNNNCN NTSSVTQFAF QTQNEHFFTL  60
DSLPATDYVV YDSPPALSVS SNRSPFSPQC SQSYMSDLHH SSDNNPCGSP FSGCSGVDDG  120
DLKHVLRELE NKLLGPESDT DDSCSCSFND VVSKPSSLTR WNRVLDIAPS LNLKELLDAC  180
AEAVSDADIS TAEILMNILE QRVSVSGEPM ERLSAYVLEG LRARLLSSGS IIYKKLKCKE  240
PTSSELLSYM QVIYNMCPYY KFAYMSANVV IREAMTNENR IHIIDFQIAQ GSQWMFLLHD  300
LARRPGGPPF VRITGVDDSQ SAHARGGGLQ LVGERLAEVA KSCGVPFEFH GAALSGCEVQ  360
LENLRVRHGE ALAVNFPYML HHMPDESVST INHRDRLLRL VKSLSPKIVT LVEQESNTNT  420
APFLPRFRET LDYYTAMFES IDAARPRDDK QRISAEEHCV ARDIVNIIAC EGADRVERHE  480
LFGKWRLRLM MAGFTPCPLS PSVGETINDI LKEYSPNYRF AESEGALYLG WKNRALATSS  540
AWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein