PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28348
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 273aa    MW: 31164.1 Da    PI: 4.639
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28348genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.32.8e-14151229291
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
               fYne+A+  GFsv k++s+k+   ++    t++C +   r+ + ++          +  +Cka+l + ++++g w+v+k++++HnHel p
  OIT28348 151 FYNEHARLRGFSVIKRNSNKK-GGDTARYITYCCDRTTIRKIKFTT----------KGNNCKARLAIVLDDSGCWHVSKVVHDHNHELLP 229
               9***************99998.55558899******9999987666..........8899***************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MDSNQENLAV QQNMNPNEHN TNTTTMNINQ DNRFDRVRDE LYRPLGMTSD DSLLNEYEWV  60
DVDSHGSFNN AVHLDDDDEE ADAAVHLDDD DEEAHGEYHG EANDDEEQVL GNELELCDVD  120
REMENEFTEE DVVVGPISGM RFRDKDTLFA FYNEHARLRG FSVIKRNSNK KGGDTARYIT  180
YCCDRTTIRK IKFTTKGNNC KARLAIVLDD SGCWHVSKVV HDHNHELLPS VSRLMAGHRS  240
VCDSLKRDLV AHDRSGIRPS KNIRIVEVQR GGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.15e-10FAR1 family protein