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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT27972 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | MYB | ||||||||
| Protein Properties | Length: 334aa MW: 38153.1 Da PI: 8.3047 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 61 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l ++v+q+G+ +W++Ia++++ gR++k+c++rw++
OIT27972 61 RGHWRPHEDAKLRELVAQFGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 106
899*****************************.***********996 PP
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| 2 | Myb_DNA-binding | 54 | 3.9e-17 | 113 | 156 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+
OIT27972 113 RRAFSEEEEERLLIAHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 156
678*******************.*********.***********96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 334 aa Download sequence |
MNSTAVSCAV EEMNLLLPCV KESPWLFNQM EEERGTNKLK DEKEEVDLVG MKKINTKLCA 60 RGHWRPHEDA KLRELVAQFG PQNWNLIAEK LQGRSGKSCR LRWFNQLDPR INRRAFSEEE 120 EERLLIAHKM YGNKWSMIAR LFPGRTDNAV KNHWHVIMAR KHREQNSVYR RRKPSNLQQI 180 NFPHIVSASN LNSDSTISSN NNNIDDHQSA STCTHLSLTP SSSKVIIPPF LMSTFTPMQQ 240 RHHQEILESN KGMSRHEEVK MESAKLLYGK EEPIAKSVEE GNECGCGNQS DTNSEISASE 300 SVANNMTNVN IYDNGKQMKS KTMHFIDFLG VGAT |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69560.1 | 2e-71 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT27972 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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