PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27947

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 355aa MW: 40693.1 Da PI: 8.4877

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27947	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.6e-06	191	210	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r n++ H+ OIT27947 191 FTCNICNKTFNRYNNMQMHM 210 89*****************9 PP
2	zf-C2H2	15.6	4.7e-05	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ OIT27947 275 FNCRKCGKTFAVKGDWRTHEKNC 297 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGIRNNYSHI VQDMDLCFQA PNFIEWLKPS SNSSSSSSPS PSNSSSSSSS AITQPRVLIH 60 HEPENPITFL KLPLLYNPQE VQDMNIDQAV QCLPLLNKLT DPKTERKEED IGERKKEWCE 120 VKEEKMEKVT VSLHIGLPDS CDVEAKLPFS FKQEEENREK LSSKIKGCNF NSESRFWIPT 180 PAQILVGPMQ FTCNICNKTF NRYNNMQMHM WGHGSEYRKG PESLRGTQPA AMLRLPCYCC 240 AQGCKNNINH PRAKPLKDFR TLQTHYKRKH GTKAFNCRKC GKTFAVKGDW RTHEKNCGKL 300 WYCICGSDFK HKRSLKDHIR SFGKGHSPHP SLNNGFEDDN FNKECTSDDE VNLTN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGIRNNYSHI VQDMDLCFQA PNFIEWLKPS SNSSSSSSPS PSNSSSSSSS AITQPRVLIH  60
HEPENPITFL KLPLLYNPQE VQDMNIDQAV QCLPLLNKLT DPKTERKEED IGERKKEWCE  120
VKEEKMEKVT VSLHIGLPDS CDVEAKLPFS FKQEEENREK LSSKIKGCNF NSESRFWIPT  180
PAQILVGPMQ FTCNICNKTF NRYNNMQMHM WGHGSEYRKG PESLRGTQPA AMLRLPCYCC  240
AQGCKNNINH PRAKPLKDFR TLQTHYKRKH GTKAFNCRKC GKTFAVKGDW RTHEKNCGKL  300
WYCICGSDFK HKRSLKDHIR SFGKGHSPHP SLNNGFEDDN FNKECTSDDE VNLTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-116	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT27947