PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27681
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8115.43 Da    PI: 10.8468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27681genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.2e-261059251
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              ri+n   rqvtfskR+ g++KKA+EL +LCdaev v ifsstg+lyeyss
  OIT27681 10 RIDNPASRQVTFSKRKSGLIKKAKELAILCDAEVGVTIFSSTGRLYEYSS 59
              8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    
MARGKIAIRR IDNPASRQVT FSKRKSGLIK KAKELAILCD AEVGVTIFSS TGRLYEYSSS  60
RFSMGLVPQD NLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.21e-31MIKC_MADS family protein