PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27594

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 893aa MW: 97458.7 Da PI: 6.1581

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27594	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	480	499	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ OIT27594 480 CRHYLK-GRCSEGEKCKFSHD 499 ****.***********7 PP
2	zf-CCCH	21.6	3.9e-07	533	553	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a +G+C++G+ C F+H OIT27594 533 PCNNYASNGFCSRGADCLFSH 553 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MENSHIGALN PLQNPFPFPP HRQRPLMSQT YTTLLQILSY NCPTTDSTTE IQKPDVCIDD 60 NGSKLGKENE VEELVDHHLI RSDNLLVNGP AHKESDNLVV QQGSDDGNEG SSRSGYRDFT 120 SAPMEVDLDL SNRTSDAIQG DRGHARTNDI DDMNRLVDKT HSFNDQMVEE PGNRCSTHES 180 EVKESDPVGP VELELSIDDV CAAIESCFGA DTVAELSQPA EVSGEEIPVP ETHLTEEMEH 240 GLRLKEMELE TLISSAGATD LSVHVPMGEE IEEGEVSVDF MVFDESDYDI VNDVRDEKKV 300 EAEKYPADIV EREDFAFDAR DNPPQKREAY ASSSIDAVDE DYTSLGGKFI RKFGEETKEY 360 VEKVFCSKDV ETRKVCVYDS ILDSGNVAKQ VGGDMKLDHP AGFQFGATSA EKAKENKHLI 420 DAAEDADIGK KKKKRGPLTK EKRAKKKAKE RIKRAEKNRK LGVKRLKLPP VVKPKVVTYC 480 RHYLKGRCSE GEKCKFSHDT TPLTKSKPCC HFARQSCMKG DDCPFDHQLS KYPCNNYASN 540 GFCSRGADCL FSHEITDKIA AVTSPTASNL ELMSPSAPSN SNSLMQINTY GVAHKDVNSS 600 SGSAGLVPGK RAERAVLEPV QKPAARTPKG VMFLSHGKSL QGDARKHEKA GLSSKADDVG 660 KLSCQMIHSK SNNVQKPNGL IKGVSTRTPQ GINFLSFGQA PSAEPSGDTY SGLFNMDYGV 720 KKLLPGGMNN SKEAATCAKR DGSVKDDNQA NLSASLWSMN QMSTRTPHAS APRGISFLSA 780 EKAAQDSSRP NEFNRASSPM QRRTSAAEEA CDEMPFRQSS SLFPAGQSLN HQSAQKCSVG 840 NASSSKTPFL ANTQPSSIQK ALQSTLAFAA KFDLGVKFGT SNGSTNITSS INH

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MENSHIGALN PLQNPFPFPP HRQRPLMSQT YTTLLQILSY NCPTTDSTTE IQKPDVCIDD  60
NGSKLGKENE VEELVDHHLI RSDNLLVNGP AHKESDNLVV QQGSDDGNEG SSRSGYRDFT  120
SAPMEVDLDL SNRTSDAIQG DRGHARTNDI DDMNRLVDKT HSFNDQMVEE PGNRCSTHES  180
EVKESDPVGP VELELSIDDV CAAIESCFGA DTVAELSQPA EVSGEEIPVP ETHLTEEMEH  240
GLRLKEMELE TLISSAGATD LSVHVPMGEE IEEGEVSVDF MVFDESDYDI VNDVRDEKKV  300
EAEKYPADIV EREDFAFDAR DNPPQKREAY ASSSIDAVDE DYTSLGGKFI RKFGEETKEY  360
VEKVFCSKDV ETRKVCVYDS ILDSGNVAKQ VGGDMKLDHP AGFQFGATSA EKAKENKHLI  420
DAAEDADIGK KKKKRGPLTK EKRAKKKAKE RIKRAEKNRK LGVKRLKLPP VVKPKVVTYC  480
RHYLKGRCSE GEKCKFSHDT TPLTKSKPCC HFARQSCMKG DDCPFDHQLS KYPCNNYASN  540
GFCSRGADCL FSHEITDKIA AVTSPTASNL ELMSPSAPSN SNSLMQINTY GVAHKDVNSS  600
SGSAGLVPGK RAERAVLEPV QKPAARTPKG VMFLSHGKSL QGDARKHEKA GLSSKADDVG  660
KLSCQMIHSK SNNVQKPNGL IKGVSTRTPQ GINFLSFGQA PSAEPSGDTY SGLFNMDYGV  720
KKLLPGGMNN SKEAATCAKR DGSVKDDNQA NLSASLWSMN QMSTRTPHAS APRGISFLSA  780
EKAAQDSSRP NEFNRASSPM QRRTSAAEEA CDEMPFRQSS SLFPAGQSLN HQSAQKCSVG  840
NASSSKTPFL ANTQPSSIQK ALQSTLAFAA KFDLGVKFGT SNGSTNITSS INH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	430	449	KKKKKRGPLTKEKRAKKKAK
2	442	450	KRAKKKAKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	7e-06	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT27594