PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27541
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28395.1 Da    PI: 9.8854
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27541genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312574150
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  OIT27541 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
              79***********************************************8 PP
2K-box107.71.3e-35931904100
     K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkklee 100
               s++ s +ea+a+++qqe++kL+++i nLq+++R++lGe+L  Lsl++L++Leq++ek+++kiRskKnell+++ie++qk+ e +l+++n++Lr+k++e
  OIT27541  93 SNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKRqEIDLHNNNQYLRAKIAE 190
               4444599**********************************************************************9984679***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MEFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIERYKKACS DSSNTGSISE ANAQYYQQEA SKLRAQIGNL  120
QNQNRNMLGE SLAALSLRDL KNLEQKIEKG ISKIRSKKNE LLFAEIEYMQ KRQEIDLHNN  180
NQYLRAKIAE TERAQQQQQI NLMPGSSSYE LVPPPQQFDT RNYLQVNGLQ TNNHYTRQDQ  240
PSLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-123MIKC_MADS family protein