PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27107
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 324aa    MW: 36288.8 Da    PI: 8.158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27107genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021194216123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               y+C++C+k+ +++  L +H  +H
  OIT27107 194 YQCEICNKMLKSSQALGSHKTVH 216
               9******************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR TLPLPPKTPP QKQDSAGGRS ESTLSLHSLK  60
EEEEEEEIRE EKYLGYGLRE NPKKSCKIVD PEFLDGAGSV VVHDNESETE STKKPTRRRS  120
KRTRRMFISE QEAVVVKKEK SAEFEPEPEP VSSFSDTSPE EDIAICLMML SKDVWRSSYE  180
SDESKFRNQK QGKYQCEICN KMLKSSQALG SHKTVHKKNN SCIEDKNEGI KSKENSRQLR  240
MKNVDQKLHE CPFCGKLYGS GQALGGHKRS HLLSSSTTAS SSSKVGDSLM DSSSAKFPNG  300
FIDLNMPAPI EDEDFSQPEV SGVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-27C2H2 family protein