PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27078
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 323aa    MW: 36406.5 Da    PI: 5.6328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27078genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.8e-112492891055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+RR+riN+++ +L++l+P+      +K++ +++Le+Av Y+k Lq
  OIT27078 249 RKRRERINEKLKTLQSLIPNG-----TKVDISTMLEEAVLYVKFLQ 289
               9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MEHVASISGE WSFFSGMYLT EEADFMAHLL GNCSLPNELP STYWTSHEST MNMGGAREVP  60
FYSSNDTNNS MYSGGSGSCF PPRSHESYYS SHSRPILMRN DSSITMEYGP VEGQINPIEA  120
DDFLNRDHAS NDSMEYNENM PDAVLDGNGL QLGRRDYYEQ FPEDKMDSSS ESSKKRCRLH  180
GPGHVPNKKR SAKVETGERD GKNKAVLQRQ NSMISCCSED ESFNASHELT RKTRASRGSA  240
TDPQSLYARK RRERINEKLK TLQSLIPNGT KVDISTMLEE AVLYVKFLQL QIKLLSSDDQ  300
WMYAPIAYNG MDLGLDLRIG IPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-52bHLH family protein