 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OIT27001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 341aa MW: 38601 Da PI: 4.3792 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 57.4 | 2.5e-18 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
OIT27001 60 KKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 113
45578899*********************************************9 PP
| |||||||
| 2 | HD-ZIP_I/II | 128 | 4e-41 | 59 | 150 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl +qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L++++e+L +e+
OIT27001 59 EKKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKASFDSLKHNYESLQHDNEALLKEIC 150
69*************************************************************************************99885 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 341 aa Download sequence |
MKRVRSSDSL GAPMMSMCQN TTDDHHQWNN QVYSRDFQSM LELGLDDEPC VEESGHGSEK 60 KRRLRVDQVK ALEKNFEVDN KLEPERKVKL AQELGLQPRQ VAIWFQNRRA RWKTKQLERD 120 YNVLKASFDS LKHNYESLQH DNEALLKEIC ELKSKLDGGN NESKADVKEE AIESETDDKD 180 IDQSKPNNNT FSLGNCEDDS TELNFESFNG GNGTINGSNI FADFKDGSSD SDSSAILNEE 240 NSPNYAAISS SGAFLISNNG GSNSSSSNSS LNCFQFFDSN PKAIVGDGQD KVVYNNQPQF 300 VKMEEHNFFS SEESCSTLFV DEQPPTLQWY CPEDWNNWKD S |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 60 | 89 | KKRRLRVDQVKALEKNFEVDNKLEPERKVK |
| 2 | 108 | 116 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G22430.1 | 2e-60 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Ensembl | OIT27001 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|