PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26938
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 316aa    MW: 34857.1 Da    PI: 9.4997
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26938genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.5e-32184240158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
   OIT26938 184 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKARKPYLHESRHLHAVKRVRGSGGRF 240
                57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MAVRAQALPN RSLEQTSTCF VPHFAVNSST WWSSNEVQSS HSLSKNLTSE VVFQPPPCQQ  60
MKSLGLGLQG DDSHSTQSNS NSPLEVTALG KTGSQDCASS GSVHDESYKR HKQAQIKPIS  120
FIRNPEYTTD CSQSEMAHSI IHTPFGYSDP YLSGLYAAYG PHVFPQMMGI APARLPLPLD  180
LAEDGPIYVN AKQYHGILRR RQIRAKLEAQ NKLVKARKPY LHESRHLHAV KRVRGSGGRF  240
LSTKKVQESI PNDHINSNSS LDLVTREAAP TSAFLSIRQD DAHNGVIFQQ QQLDHRASSL  300
SSHMAVSMQS SRSTGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-38NF-YA family protein