PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT26865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25374.6 Da PI: 8.0521 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.3 | 4.8e-19 | 20 | 61 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+i+n+ r+vtfskRr g++KKA+EL++L +ae+a+++ s OIT26865 20 KPIDNQNSRHVTFSKRRLGLFKKASELCILSGAEIAILVQSL 61 68*************************************984 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MNTTISTMKK TQGRRKIAIK PIDNQNSRHV TFSKRRLGLF KKASELCILS GAEIAILVQS 60 LKRQRLFAFG HPNADAVIDR YLTGKSSSSS STVDQLNVQQ NNQYYSQICR ELEAEKKKKE 120 IIENSKIVNN NSNNEGFWWN ESIDDMGIEE LEEFMGALEE LKKKITLRAD ELSMINGSSV 180 VPTASTLNNN IARFGAEDQF LNQAAIDYCS SIVPYQFNHP GDGQF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT26865 |