PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT26834

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1014aa MW: 112328 Da PI: 7.3078

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26834	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.5e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g+t +qV+ +F +R++ +k OIT26834 66 KRPRDLLNPKAIKYMQSVFSIKDAINKKETREISALFGVTVTQVRDFFTAQRTRVRK 122 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1014 aa Download sequence
MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QSVFSIKDAI NKKETREISA LFGVTVTQVR DFFTAQRTRV 120 RKFLRLSREK ASISNASIEG PCPIPLSSES DPSSQTEPVP LDSVAPTCTE EGPSCSTQDD 180 VLTGIEETDK HFLDNILTLM RKEETFSGQV KLMGWILEVQ NSSVLFWFLA KGGVMILATW 240 LSQAAVEEQT SVLNIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRARILLA 300 KWSKMFAKSQ AMKKRNGIKS ASDVQDELLL QQSIGEVMGD EIWNSKAEDV GESHANLCGP 360 SENSRKLDSP HPVKLLTASS DDSNKRLNKG ALASKTRERR KVQLMEQPSQ RTTGRSLAVG 420 RPATATQGRP LSADDIQKAK MRAQFMQSKY GKAKNDESSR VKPEAPNGVT SPQDDILQGA 480 PKLQGCPKDD EHEKLDTVAL KGFKQQESHR KLSFDVEEPP WKRCRRMQIP WCKPPEVKMS 540 DAWKVCDGGE SKEVDIQNNR IHRERETIYR TVQEIPLNPK EPWDCEMDPD DTLTIEIPIE 600 QLPDAEGAET VVLRPEDEET EAASASTSNG IATTAEPDVE LLAVLLKNPE LVYALTSGQA 660 GNLSSEETVK LLDMIKANGM NSLSSVTDLG RTAEKKVEVS LPSPTPSSDP GTSGSMHGFA 720 KNPFSQRSLM AVPEANGATQ LAALVRSQEK LQASSSIYPQ STSTTMLAPQ QLPIAPQLAQ 780 QLSLLQAAAG SFGKDHRLSP LNPSLNQTVL ANPMHSQLSA SEPAVNRNNY SPFGLMEYNL 840 HSATASAATT RIQGQTSGNI RSSPMPIANV QERTISLHMP QMAVSHQLQT QPQPGYAPEH 900 MWGTMSGSTL NRGYQENSIP NHYSARLAGH VEPGLQQAAW RGNYVEEAGF ESWSPDNSPV 960 RRQEQLGRWN HSEPRMNMRE NYRSDWSTSR NPSYYSGYHG PDDGGNRRWG DRRR

Sequence ? help Back to Top

Protein Sequence Length: 1014 aa Download sequence

MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL  60
SIKIGKRPRD LLNPKAIKYM QSVFSIKDAI NKKETREISA LFGVTVTQVR DFFTAQRTRV  120
RKFLRLSREK ASISNASIEG PCPIPLSSES DPSSQTEPVP LDSVAPTCTE EGPSCSTQDD  180
VLTGIEETDK HFLDNILTLM RKEETFSGQV KLMGWILEVQ NSSVLFWFLA KGGVMILATW  240
LSQAAVEEQT SVLNIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRARILLA  300
KWSKMFAKSQ AMKKRNGIKS ASDVQDELLL QQSIGEVMGD EIWNSKAEDV GESHANLCGP  360
SENSRKLDSP HPVKLLTASS DDSNKRLNKG ALASKTRERR KVQLMEQPSQ RTTGRSLAVG  420
RPATATQGRP LSADDIQKAK MRAQFMQSKY GKAKNDESSR VKPEAPNGVT SPQDDILQGA  480
PKLQGCPKDD EHEKLDTVAL KGFKQQESHR KLSFDVEEPP WKRCRRMQIP WCKPPEVKMS  540
DAWKVCDGGE SKEVDIQNNR IHRERETIYR TVQEIPLNPK EPWDCEMDPD DTLTIEIPIE  600
QLPDAEGAET VVLRPEDEET EAASASTSNG IATTAEPDVE LLAVLLKNPE LVYALTSGQA  660
GNLSSEETVK LLDMIKANGM NSLSSVTDLG RTAEKKVEVS LPSPTPSSDP GTSGSMHGFA  720
KNPFSQRSLM AVPEANGATQ LAALVRSQEK LQASSSIYPQ STSTTMLAPQ QLPIAPQLAQ  780
QLSLLQAAAG SFGKDHRLSP LNPSLNQTVL ANPMHSQLSA SEPAVNRNNY SPFGLMEYNL  840
HSATASAATT RIQGQTSGNI RSSPMPIANV QERTISLHMP QMAVSHQLQT QPQPGYAPEH  900
MWGTMSGSTL NRGYQENSIP NHYSARLAGH VEPGLQQAAW RGNYVEEAGF ESWSPDNSPV  960
RRQEQLGRWN HSEPRMNMRE NYRSDWSTSR NPSYYSGYHG PDDGGNRRWG DRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-165	HB-other family protein

Link Out ? help Back to Top
Ensembl	OIT26834