PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26832
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 76893 Da    PI: 7.8582
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26832genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24113214199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++el+v
  OIT26832 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGELCV 209
               89****************************997556555..8************************************************..449999*** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OIT26832 210 GIRRA 214
               ***97 PP
2Auxin_resp116.22.9e-38273356183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa  a+++++FevvY+Prast+eF+v++++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp++WpnS+Wr+L+
    OIT26832 273 AAYLAASGQPFEVVYYPRASTPEFCVRASSVNTAMRIHWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIHWPNSPWRLLQ 356
                 577899****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    
MKEVMEKYVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLVNVDFST LPRTPALILC  60
RVAAVKFLAD PETDEVYARI RLVPVGNKGN DFDDDNILGG SNETGTNDKP TSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSNFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPETPSGWNS ASGNFSGFSA  240
FLREDMNKNG SLNSSGGSFR GKGRVRPEAV IEAAYLAASG QPFEVVYYPR ASTPEFCVRA  300
SSVNTAMRIH WCSGMRFKMA FETEDSSRIS WFMGTISSIQ VADPIHWPNS PWRLLQVTWD  360
EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFLLDGQFP LPSFSGNPLR  420
SSSPFCCLSD NITAGIQRAR HAQFGVPLLD LHLSNKVQSG LLPPSFQRVA ADSKLTNCIN  480
KGQNDRNDNI SCLLTMSTSS QMSEKTDSVN TPRFLLFGQP ILTEQQISNR CSANAQEVQT  540
GRDLGRIELR NERFAFEQKG LQDSVSSATY LWNRGHHAAG LGADTGQCKV FLESEDVGLS  600
LDLSVLGSYE ELYRRLGNLF GLERSDMLTC VLYHDATGAV KHTGDEPFSD FIKTAKRLTI  660
LMNPSSNIER KWITGLATAE RGLDSSNRAG PLSIFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein